McLaughlin, JA and Myers, CJ and Zundel, Z and Misirli, G and Zhang, M and Ofiteru, ID and Goñi Moreno, A and Wipat, A (2018) SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology. ACS Synthetic Biology. ISSN 2161-5063

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Abstract

The SynBioHub repository (synbiohub.org) is an open-source software project which facilitates the sharing of information about engineered biological systems. SynBioHub provides computational access for software and data integration, and a graphical user interface that enables users to search for and share designs in a Web browser. By connecting to relevant repositories (e.g. the iGEM repository, JBEI ICE, and other instances of SynBioHub), the software allows users to browse, upload, and download data in various standard formats, regardless of their location or representation. SynBioHub also provides a central reference point for other resources to link to, delivering design information in a standardized format using the Synthetic Biology Open Language (SBOL). The adoption and use of SynBioHub, a community-driven effort, has the potential to overcome the reproducibility challenge across laboratories by helping to address the current lack of information about published designs.

Item Type: Article
Additional Information: The final published version of this article can be found online at http://pubs.acs.org/doi/10.1021/acssynbio.7b00403
Uncontrolled Keywords: Synthetic Biology Open Language; SBOL; Repository; Web of Registries; Data Standards; Database; Sharing
Subjects: Q Science > Q Science (General)
Q Science > QA Mathematics
Q Science > QA Mathematics > QA75 Electronic computers. Computer science
Divisions: Faculty of Natural Sciences > School of Computing and Maths
Related URLs:
Depositing User: Symplectic
Date Deposited: 16 Jan 2018 15:02
Last Modified: 16 Jan 2018 15:02
URI: http://eprints.keele.ac.uk/id/eprint/4372

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